Classes
class	GeneTree
	Global object for gene-trees. More...

class	GeneTreeEvent
	The evolutionary event that took place at this node of the tree. More...

class	GeneTreeMember
	A leaf of a gene-tree, i.e. More...

class	GeneTreeNode
	Node in a gene-tree. More...

class	GenomicAlignment

class	GenomicAlignmentEntry

class	Homolog

class	HomologyGroup
	Group of multiple homology-pairs. More...

class	HomologyPair
	Homology pair. More...

class	MethodLinkSpeciesSet

class	NCBITaxon
	A node in the NCBI taxonomy. More...

Functions
def	_tax_parent

def	_tax_children

def	_gtn_get_all_leaves
	Get all the leaves under this node. More...

def	_gtn_get_all_nodes
	Get all the nodes in this sub-tree, including the root. More...

def	_gt_get_all_leaves
	Get all the leaves in this tree. More...

def	_gt_get_all_nodes
	Get all the nodes in this tree. More...

Function Documentation

def ensembl.compara._gt_get_all_leaves ( self )

private

Get all the leaves in this tree.

Definition at line 152 of file compara.py.

def ensembl.compara._gt_get_all_nodes ( self )

private

Get all the nodes in this tree.

Definition at line 161 of file compara.py.

def ensembl.compara._gtn_get_all_leaves ( self )

private

Get all the leaves under this node.

Definition at line 124 of file compara.py.

def ensembl.compara._gtn_get_all_nodes ( self )

private

Get all the nodes in this sub-tree, including the root.

Definition at line 138 of file compara.py.

def ensembl.compara._tax_children ( self )

private

Definition at line 11 of file compara.py.

def ensembl.compara._tax_parent ( self )

private

Definition at line 2 of file compara.py.

Classes