Matthieu Muffato

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Posters

The complete list of posters is available at these databases:

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icon Tree of Life Informatics Infrastructure

Sharing Nextflow code across organizations using the nf-core infrastructure

João Vitor Ferreira Cavalcante, The nf-core community, Tree of Life Informatics Infrastructure Team, Matthieu Muffato
DOI: 10.5281/zenodo.13913055

WESkit: Workflow execution for HTC and cloud

Philip R. Kensche, Valentin Schneider-Lunitz, Cibin Sadasivan Baby, Alexander Kanitz, Matthieu Muffato, Sven Twardziok, Ivo Buchhalter
DOI: 10.7490/f1000research.1119541.1

Core resources for genome analysis

Matthieu Muffato, Mark Blaxter
DOI: 10.5281/zenodo.8063873

icon Ensembl and icon TreeFam methods

Scalable infrastructure for comparative genomics in the era of large-scale Tree of Life projects

Matthieu Muffato, Cristina Guijarro-Clarke, Jorge Alvarez-Jarreta, Carla Cummins, Thiago Genez, David Thybert, Kevin Howe
DOI: 10.7490/f1000research.1118390.1

Inclusion of pseudogenes in the Ensembl comparative genomics resources

Guillaume Giroussens, Matthieu Muffato, Paul Flicek
DOI: 10.7490/f1000research.1116155.1

Genome-wide assessment of ortholog quality in Ensembl

Wasiu Akanni, Mateus Patricio, Matthieu Muffato, Bronwen Aken, Paul Flicek
DOI: 10.7490/f1000research.1115084.1

Automated filtering of multiple sequence alignment worsens phylogenetic inference

Ge Tan, Matthieu Muffato, Christian Ledergerber, Javier Herrero, Nick Goldman, Manuel Gil, Christophe Dessimoz
DOI: 10.7490/f1000research.1115083.1

Moving towards comparative analysis of hundreds of vertebrate genomes

Carla Cummins, Mateus Patricio, Wasiu Akanni, Matthieu Muffato, Bronwen Aken, Paul Flicek
DOI: 10.7490/f1000research.1115012.1

Scaling up the TreeFam resource in Ensembl

Mateus Patricio, Matthieu Muffato, Uma Maheswari, Nishadi De Silva, Paul Kersey, Bronwen Aken, Paul Flicek
DOI: 10.7490/f1000research.1115011.1

Ensembl comparative genomics update – HMMs and Orthology QC

Mateus Patricio, Matthieu Muffato, Wasiu Akanni, Carla Cummins, Bronwen Aken, Paul Flicek
DOI: 10.7490/f1000research.1114127.1

TreeFam and Ensembl: Phylogenetic resources

Mateus Patricio, Matthieu Muffato, Bronwen Aken, Paul Flicek
DOI: 10.7490/f1000research.1112451.1

icon eHive workflow manager

eHive – Flexible and scalable pipeline

Andy Yates, Bronwen Aken, Stephen Fitzgerald, Leo Gordon, Matthieu Muffato, Miguel Pignatelli, Paul Flicek
DOI: 10.7490/f1000research.1111870.1