ensembl.genome Namespace Reference

Classes
class	CDSFeature
class	ChipSeqFeature
class	ConstrainedElementFeature
class	CoordMapping
class	ExonFeature
class	Feature
class	FeatureLikeBiotype
class	FeatureWithID
class	GeneFeature
class	Identifier
class	Location
class	MiscFeature
class	MotifFeature
class	RegulatoryFeature
class	RepeatFeature
class	Sequence
class	SimpleFeature
class	StructuralVariationFeature
class	TranscriptFeature
class	TranslationFeature
class	VariationFeature

Functions
def	feature_wrapper
	Wrapper arround the various types of features. More...

Variables
dictionary	__feature_types

Function Documentation

def ensembl.genome.feature_wrapper	(		d,
			r
	)

Wrapper arround the various types of features.

It automatically selects the appropriate type for the fetched features.

Definition at line 234 of file genome.py.

Variable Documentation

dictionary ensembl.genome.__feature_types

Initial value:

= {
        'gene' : GeneFeature,
        'transcript' : TranscriptFeature,
        'cds': CDSFeature,
        'exon' : ExonFeature,
        'repeat' : RepeatFeature,
        'simple' : SimpleFeature,
        'misc' : MiscFeature,
        'variation' : VariationFeature,
        'somatic_variation' : VariationFeature,
        'structural_variation' : StructuralVariationFeature,
        'somatic_structural_variation' : StructuralVariationFeature,
        'constrained' : ConstrainedElementFeature,
        'regulatory' : RegulatoryFeature,
        'motif' : MotifFeature,
        'chipseq' : ChipSeqFeature,

        'translation' : TranslationFeature,
}

Definition at line 209 of file genome.py.