compara.py File Reference

Go to the source code of this file.

Classes
class	ensembl.compara.NCBITaxon
	A node in the NCBI taxonomy. More...
class	ensembl.compara.GeneTreeMember
	A leaf of a gene-tree, i.e. More...
class	ensembl.compara.GeneTreeEvent
	The evolutionary event that took place at this node of the tree. More...
class	ensembl.compara.GeneTreeNode
	Node in a gene-tree. More...
class	ensembl.compara.GeneTree
	Global object for gene-trees. More...
class	ensembl.compara.MethodLinkSpeciesSet
class	ensembl.compara.Homolog
class	ensembl.compara.HomologyPair
	Homology pair. More...
class	ensembl.compara.HomologyGroup
	Group of multiple homology-pairs. More...
class	ensembl.compara.GenomicAlignmentEntry
class	ensembl.compara.GenomicAlignment

Namespaces
	ensembl.compara

Functions
def	ensembl.compara._tax_parent
def	ensembl.compara._tax_children
def	ensembl.compara._gtn_get_all_leaves
	Get all the leaves under this node. More...
def	ensembl.compara._gtn_get_all_nodes
	Get all the nodes in this sub-tree, including the root. More...
def	ensembl.compara._gt_get_all_leaves
	Get all the leaves in this tree. More...
def	ensembl.compara._gt_get_all_nodes
	Get all the nodes in this tree. More...